Peptide toxicity prediction

Step.1: Input sequences in fasta format

  

Sample fasta Sequence(s)

>1|
IIGGDECNINEHPFLVALYDA
>2|
VVGGDCIPQVPFLAFLYSEYFC
>3|
MTAKKVALACSVCGQRNYFVPENPKRTERLTLKKFCKHCGRVTVHQETK
>4|
FLPLLAGLAANFFPKIFCKITRKC
>5|
WNPFKELERAGQRVRDAIISAAPAVATVGQAAAIARG
>6|
GFKDWIKGAAKKLIKTVASAIANQ
>7|
GPIQISYNYNYGPCGRYCGILGVSPGDNLDCGNQR

Instructions

To use the classifier to predict the toxicity of peptides, either:

  • paste your FASTA-formatted peptide sequences into the text area, or
  • upload a FASTA-formatted file with your peptide sequences.

Fasta must be the same format like sample

If the length of a sequence is more than 50, it will not be predicted.

Press the "Submit" button to upload the sequences and begin the classification.

Waiting a moment and your results will be presented in web page.

Dependencies

  • Java 1.8.0
  • IntelliJ IDEA
  • Pycharm
  • Python 3.9
  • Pytorch
  • numpy
  • pandas